Picosecond conformational transition and equilibration of a cyclic peptide.

نویسندگان

  • Jens Bredenbeck
  • Jan Helbing
  • Arne Sieg
  • Tobias Schrader
  • Wolfgang Zinth
  • Christian Renner
  • Raymond Behrendt
  • Luis Moroder
  • Josef Wachtveitl
  • Peter Hamm
چکیده

Ultrafast IR spectroscopy is used to monitor the nonequilibrium backbone dynamics of a cyclic peptide in the amide I vibrational range with picosecond time resolution. A conformational change is induced by means of a photoswitch integrated into the peptide backbone. Although the main conformational change of the backbone is completed after only 20 ps, the subsequent equilibration in the new region of conformational space continues for times >16 ns. Relaxation and equilibration processes of the peptide backbone occur on a discrete hierarchy of time scales. Albeit possessing only a few conformational degrees of freedom compared with a protein, the peptide behaves highly nontrivially and provides insights into the complexity of fast protein folding.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Ab Initio Study of Conformational and Configurational Properties of 1, 3- Diazacyclohepta-1, 2-diene and 1, 3-Diazacycloocta-1, 2-diene

Ab initio calculations at HF/6-31G* level of theory for geometry optimization and MP2/6-31G*//HF/6-31G* for a single point total energy calculation are reported for the importantenergy-minimum conformations and transition-state geometries of 1, 3-diazacyclohepta-1, 2-diene (2) and 1, 3-diazacycloocta-1, 2-diene (3). The C2 symmetric twist-chair (2-TC)conformation of 2 is calculated to be 7.4 kJ...

متن کامل

An Ab Initio SCF-MO Study of Conformational Properties of Cyclodeca-1,2,3-triene

Ab initio calculation at HF/6-31G* level of theory for geometry optimization and MP2/6-31G*//HF/6-31G* for a single point total energy calculation are reported for the important energyminimumconformations and transition-state geometries of of cyclodeca-1,2,3-triene (1). The mostfavorable conformation of 1 is a unsymmetrical twist-chair (1-TC) structure. Degenerateinterconversion of 1-TC with it...

متن کامل

John D Roberts Studies of Conformational Equilibria and Equilibration by Nuclear Magnetic Resonance Spectroscopy

The study of conformational equilibria and equilibration by nuclear 111agnet£c resonance in cyclic co111pou11ds has been found lo be considerably facilitated by use of 19 F spectra of gemfluoro derivatives. R esults obtained zcith cyclohexane, cis-decali11, and cyclohepta11e ring systems were re·vieu·ed zcith particular emphasis on the degree with which conclusions drawn might also be applicabl...

متن کامل

Transient two-dimensional infrared spectroscopy – towards measuring ultrafast structural dynamics

Ultrafast two-dimensional infrared spectroscopy (2D-IR) is a promising tool for the investigation of molecular structures [1-3] and their equilibrium fluctuations [2, 4]. Similar to 2D-NMR spectroscopy [5], cross-peaks between coupled states emerge in 2D-IR spectra, and contain structural information [2, 6]. The outstanding feature of 2D-IR spectroscopy is the combination of its structure resol...

متن کامل

Conformational Substates of Myoglobin Intermediate Resolved by Picosecond X-ray Solution Scattering

Conformational substates of proteins are generally considered to play important roles in regulating protein functions, but an understanding of how they influence the structural dynamics and functions of the proteins has been elusive. Here, we investigate the structural dynamics of sperm whale myoglobin associated with the conformational substates using picosecond X-ray solution scattering. By a...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Proceedings of the National Academy of Sciences of the United States of America

دوره 100 11  شماره 

صفحات  -

تاریخ انتشار 2003